Workshops

There will be four workshops taking place on Monday 1st July. Two will run in parallel in the morning and two in the afternoon. Places are limited for these workshops and places must be pre-booked during registration.

The workshops are as follows:
10.00 - 12.00  Workshop 1A: The Role & Development of Separation Techniques in Metabolomics Chair: Dave Watson, University of Strathclyde, UKLiquid Chromatography Mass SpectrometryDave Watson, Glasgow, UK Gas Chromatography Mass Spectrometry Oliver Fiehn, Davis, CA, USA Capillary Electrophoresis Mass Spectrometry   Tomoyoshi Soga, Tsuruoka, Japan Panel Discussion For more information on this workshop please click here.

10.00 - 12.00 Workshop 1B: Workshop on Metabolomics Data Dissemination, Standardization and Exchange(COSMOS/MetaboLights/NIH common funds Session) Background General Metabolomics Standards and Data Storage and Data Exchange in Different Standard Formats Reza Salek, EMBL-EBI, UK Hands on MetaboLights Tools and Data Submission using ISACreator        Kenneth Haug, EMBL-EBI, UK,  Philippe Rocca-Serra, EMBL-EBI, UK & Reza Salek, EMBL-EBI, UK Overview COSMOS (COordination Of Standards In MetabOlomicS) Initiative on Metabolomics Standards  Christoph Steinbeck, EMBL-EBI, UK   Introduction to the NIH Common Funds Metabolomics Consortium, Regional Comprehensive Metabolomics Research Cores" (RCMRC), Data Repository and Coordination Center (DRCC)  Philip F. Smith, National Institute of Diabetes and Digestive and Kidney Diseases, USA Discussion with Users and Participants Moderator: Marta Cascante, Universitat de Barcelona, Spain & Christoph Steinbeck, EMBL-EBI, UK    

14.00 - 16.00 Workshop 2A: Data Processing and Experimental Design Chair: Gavin Blackburn, University of Strathclyde, UK Introduction and Experimental Design - Considerations, Do’s and Don’ts, Who to Include and How to Plan (Download information here) Gavin Blackburn, University of Strathclyde, UK, & Karl Burgess, University of Glasgow, UK MZMatch.R – Demonstration of MZMatch.R software Andris Jankevics, University of Manchester, UK IDEOM – Demonstration of IDEOM for Metabolite Analysis (Download information here) Darren Creek, University of Melbourne, Australia MZMine2 – Demonstration of MZMine2 (Download information here) Tong Zhang, Strathclyde Institute of Pharmacy and Biomedical Sciences, UK MZMatch-ISO – An R Tool for the High Precision Analysis of Isotope Labelled Mass Spectrometry Data - Discussion of MZMatchISO for Analysis of Labelled Samples Unni Chokkathukalam, Glasgow Polyomics, UK Discussion  

14.00 - 16.00 Workshop 2B: Mass Spectrometry and  NMR in Metabolomics Chair: Warwick Dunn, University of Birmingham, UK, & Julian Griffin, Medical Research Council Human Nutrition Research, UK Reporting Standards for Metabolite Annotation and Identification Warwick Dunn, University of Birmingham, UK Metabolite Annotation and Identification Applying NMR Spectroscopy Speaker TBC Quantitation of Metabolites Applying NMR Spectroscopy Speaker TBC Quantitation of Metabolites Applying Liquid Chromatography-triple Quadrupole Mass Spectrometry Rob Vreeken, Leiden University and Netherlands Metabolomics Centre, The Netherlands MUSCLE – Software for Automated Optimisation of Targeted LC-MS Methods Gregory Genta-Jouve, University of Birmingham, UK These workshops will take the following format: 1. The leaders of the session will give a short 15 minute overview of advances in their area of interest  2. Delegates will be invited to submit a short case study. These will consist of  a five minute presentation of three slides on a problem they either are trying to solve or have solved. Six of these will be selected for presentation.

For further information on how to submit please contact Lotte Kerr at Lotte@in-conference.org.uk. 3. Delegates will be invited to submit questions in advance for consideration during a panel discussion. Should you have any questions please submit these via our Linkedin Page or by emailing Lotte Kerr at Lotte@in-conference.org.uk  4. Other ideas will be considered. If you have any ideas for these workshops please let us know via our Linkedin Page or Twitter